DAEHAN HWAHAK HWOEJEE
(Journal of the Korean Chemical Society) Vol. 21, No. 1, 1977
Printed in Republic of Korea
결정 및 분자구조 具廷會 •金勳燮• 安里泰
서울대학교 자연과학대학 화학과
(1976.
10.
26접수)
The Crystal and Molecular Structure of Salicylaldehyde-4-morpholinothiosemicarbazone
C. H. Koo, H. S. Kim and C. T. Ahn
Department of Chemistry^ College of Natural Sciences^
Seoul National University, Seoul, Korea
(Received
Oct.26, 1976)
요 흐
E Salicylaldehyde-4-morpholinothiosemicarbazone, G2H15O2N3S,결 정 은 직 각비 등축정 계 에 속 하며 공간군은
P混
21이다. 단위세포에는
4개의 분자가 포함되며 세포 길이는
tz=LL85(5), 3=15.45 (5), 0=7.18(3) A이 다. 농도는
multiple-film equi-inclination Weissenberg사진으로 부터
3차원적 농도 데 이 타를 얻 어 목측법 에 의 하여 측정 하였다. 결 정 구조는
Patterson및
Fourier법 으로 해 명 하였 으며 구조의 정 밀화는
block-diagonal최 소자승법 으로 하였으며 & 값은
10M개 의 반사에 대 하여
0.1L이었다. 몰포린 고리는 의자형이며
1분자내의 몰포린 고리와 황원자를제외한 원자들은 대략 한 평
면을 이룬다. 수산화기의 산소원자는 질소원자와
2.67A의 거 리로
0—H…N형 수소결합을 하고 있 고 분자간에는
van der Waals접촉으로 연결되 어 있다.
ABSTRACT. Crystals of salicylaldehyde-4-morpholinothiosemicarbazone, C12H15O2N3S, are orthor
hombic with space group Pna2i. Unit-cell dimensions are a=ll. 85(5), 3=15.45(5) c~7.18(3) A with z=4.
Three-dimensional intensity data were collected from the multiple-film equi-inclination Weissen
berg photographs taken with CuKa radiation. The intensities were estimated visually. The structure was solved by Patterson and Fourier methods and refined by the block-diagonal least-squares me
thods until the final R value becomes 0.11 for the 1064 observed independent reflections.
The morpholine ring has a chair form. The rest atoms of salicylaldehyde-4-morpholinothiosemi- carbazone molecule excluding morpholine ring and sulfur atom approximately lie on a plane. The hydroxyl group of the salicylaldehyde and the nitrogen atom of the thiosemicarbazone form an in
tramolecular hydrogen bond, O—H…N, of 2. 67A. The short intermolecular distances all appear to be normal van der Waals contacts.
—3 —
4
具廷會,金 勲 燮•安重泰
INTRODUCTION
A large number of a-(N) heterocyclic thio
semicarbazones with definite carcinostatic activity were reported by French and Blanz1. Their hypothesis was that a thiosemicarbazone which could function as a tridentate
사
relate capable of forming octahedral complexes with metal ions would possess antitumor activity. The assumption of French and Blanz regarding the
산
relating ability of thiosemicarbazone was confirmed by results of crystal structure analysis ofbis (iso-
quinoline-l-carboxaldehyde thiosemicarbazana- to) nickel (II) monohydrate by Mathew and Palenik2.A comparison of the results of Palenik and coworker1 s3 structural studies on antitumor active 5-hydroxy~2-formylpyridine thiosemicarbazone sesquihydrate and inactive acetone thiosemicarba
zone with the available structural data on other thiosemicarbazones suggested some generaliza
tions regarding the electronic structures, com
plexing abilities and biological activities of thio- semicarbazones.
Apparently a knowledge of conformation and bond lengths and angles which result from structure analysis could be much meaningful for the study of biological activity. Therefore, a crystal structure analysis of salicylaldehyde-4- morpholinothiosemicarbazone was undertaken as part of a program devoted to explain the rela
tionship between three dimensional structure of thiosemicarbazone and its biological activities.
EXPERIMENTAL
A sample of salicylaldehyde-4-morpholinothio- semicarbazone was kindly provided by Y. S.
Chough at the College of Pharmacy, Seoul National University.
Crystals suitable for the determination of the unit-cell dimensions and for the measurement of
"一
NH-N=c"/
\
the intensities were obtained by recrystallizing the dissolved crystals in a concentrated aqueous solution of
N,
JV^dimethylformamide. The density of single crystals was measured by the flotation method in a mixture of carbontetrachloride and benzene.Cell dimensions were determined by least-' squares calibration from zero-layer Weissenberg photographs around
〔
010〕
and C001J, calibration being made with superposed Al line.Crystal data
Salicylaldehyde-4-morpholiothiosemicarbazone;
OH H I
丨
CT c=c/
! I H H Formula weight; 265. 34
Crystal system; orthorhombic
a=U.
85(5),》=
15. 45(5),c=7.
18(3) A 2 = 4V=1314.6A3 ,
Dx~l.
34 g • cm-3Dm = L
32 g-cm-3 Space group;Pna2i
Systematic absences;
Okl
with为
+Z=2筮
+1 andhOl
with兀
=2龙
+1.Weissenberg photographs, using the multiple
film technique, were taken with
CuKa
radiation, where the layers were from Oth to 6th about c-axis. Two layers, Oth and 1st, were taken about a-axis for scaling purposes. A total of 1064 independent reflections were recorded.Intensties were estimated visually with a stan
dard film strips and corrections were applied to the data for Lorentz and polarization effects as well as for spot shape, and reduced to the structure factors. No corrections were made for absorption. The structure factors of the various layers were put on a single scale by hand. An
Journal of the Korean Chemical Society
SalicylaIdehyde-4-morphelinothiosemicarbazones] 결정 및 분자구조 5 Table 1. Atomic positional parameters
and
anisotropic temperature factorsfor
the non-hydrogen atomsin salicylaldehyde-4-morpHolinothiosemicarbazone.
Thee.s.d?s are
given inparentheses
inunits of the last decimal place.
(a) Positional
parametersX y z
c(
1)0. 016(3) -0.112(2)
0.448(2)C(
2) -0. 073(3)-0.163(2)
0. 347(3)C(
3) 0.059(1)-0. 253
⑴ 0.193(2)C(
4) 0.157(3) -0.210(2)
0.302(2)C( 5)
0. 202(1) -0.049(1) 0.
353(2)C(
6) 0.499(1) -0. 025(1)0.357(2)
C(
7)0.
581(1) 0.045(1)0. 336(2)
C(
8) 0.696(1) 0.026(1) 0.367(3)
C( 9)
0.
784(3) 0.089(3)0.
353(3)C(10)
0.751(2)
0.176(2) 0.313(2)C(ll)
0.
634(2) 0.201(2)0. 274(2)
C(12)
0.553(1)
0.130(1) 0.290⑵N( 1) 0.130(1) -o. 121(1) 0.362(2)
N(
2)0.
316(1)-0.075(1)
0. 342(2)N(
3) 0. 394(1)-0.008(1) 0.
322(2)0(
1)-0.041(1) -0.
2502(4)0. 303 ⑴
0(
2)0.442(1) 0.158(1) 0. 253(1)
s
0.1621(3)
0. 0554(2) 0.371(1)(b) Anisotropic
temperature factorsThe
anisotropictemperature
factorsare
expressed in the form:exp{
—(B11&2+B22注+B3 丿2 + 2B12膈+2&3砂+
2场 成/)}.
Values areX10
5and standard
deviations in parentheses referto
the leastsignificant
digits.Bn b
2
^33 ■B12 ■®13 -B23C
⑴1075(233)
652(176)3300(432) -15(98) 141(230) 14(181)
c⑵ 1071(217)
637(169)2874(391) -62(95)
21(217) -32(167)c
⑶975(112)
528(61)2745(354) -87(76)
-138(170)0(126)
c
⑷1035(196) 709(151) 2419(413) -201 (88)
133(234)22(130)
c
⑸
673(82) 511(50)2465(290)
-5(53) -24(177) -158(129)c
⑹ 596(70) 399(40)1868(241)
17(45) -125(144) -44(110)c
⑺ 603(68) 422(42)1830(287) -3(42)
34(115) 15(95)c⑻
782(89) 494(49)2166(287) 43(53) 239(197) 136(144)
c⑼ 967(208) 565(161) 3126(457)
32(88) -97(246) -136(160)C(10)
1079(229) 591(167) 3570(459) -78(84)
-195(201)18(159)
C(ll) 989(204)
450(155) 2442(417) 0(80) -202(251)
-30(145>C(12) 696(89) 421(50),
2646(305) -13(56)
217(133) -86(106)N
⑴ 733(61) 357(33)1934(203)
2(38) -23(131)11(95>
22) 580(63) 419(36)
1983(230) -1(36)
-16(107)一
35 (82〉
N
⑶ 851(74) .439( 驻 ) 2471(289) 7(49) -159(117)
107(94>
O⑴ 563(48) 308(26)
1789(172)
-3(31)-35( 72) -34(55)
0(2)
818(69) 499(39)2565(221) 27(45)
-75(106) 35(80)S 851(21)
503(12)2595(71)
17(16)0( 48) -17(36)
Vol. 21, No. 1,1977
Tabls 2. Observed ;and calcmlated structure factors.
H K L Fo Fc H K L Fo Fc H K L Fo Pc
0 2 54.4b 53.86 5 7 12.92 11
a
7.54 5.450 4 28.47 25.31 5 8 9.72 8.15 11
12
.1.87 2.830 6 19.45 16.00 5 12 5.09 6.91
1 고
0 2.41 2.100 8 4.65 5 14 i2・* 10.90
12 2
10.06고
。,
880 10 35.41 3*.b0 5 15 2.16 2・69
12
4 5.90 2.200 12 1.64 1.77 5 16 6.05 6・"
12
5 l.Tfl 1.460 16 9.03 11.17 5 17 3.69 4.45 12 8 11.27 11.16
0 18 0 1.93 0.94 5 16 0・65 0.65 12 10 1.62 2.31
1 1 0 29.32 29.93 6 0 21.85 22.14 13 1 4.64 4.93
1 2 0 74.85 74.45 6 2 0 30.50 32.98 13 4 女・65 5. 00
X
3 0 31.47 30.18 4 Q 11.56 10. 14 0 0 0.49 1.261
4 0 0.94 0,-66 6 0 3G.61 28.81 14 3 0 5.56 5.^41
5 0 51.02 49,93 7 g 21.29 13.20 14 5 0 3,27 3.8?1
6 0 13.97 11.75 8 0 16.53 lb.77 14 B 0 1.73 1.442
7
0 29.77 28.17 9 0 13.84 12.11 15 ] 0 r・33 3.701 8 0 20.13 17.80 11 0 1.42 2.30 1 19.33 ie.9t
10 0 13.26 12.50 12 0 [4 . 12.66 3 ] 庭.36 62.22
1 11 0 5.45 3.94 6 14 o 4.63 3.37 0 5 1 e9“8 48.01
1 12 0 16.49 19.00 6 16 0 i.>7 2.43 0 7 1 61.36 60.91
1 13 0 6.96 7.19 b 17 0 5.86 6.2C 0 9 i 18« 65 19.C8
1 16 0 6.93 7.27 7 1 0 23.66 23.71 0 11 ] 10.66 9»94
1 17 0 6.42 6.99 7
2
0 7.11 6,48 0 13 1 17.84 19,421 19 0 4.01 3.96 7 5 0 11.30 1U.56 0 15 1 6.10 3.8 7
2 0 0 20・69 21.60 7 6 0 9.T1 10.47 0 17 1 7.31 9.12
2 1 0 14.74 14.57 7 8 0 12.7b 11.56 0 19 1 2.29 1.99
2
2
0 56.60 60.03 7 9 0 3.01 4,01 11
1 53.472 3 0 45.91 44.19 7 10 0 4.73 5.46 1 2 1 72.83 72.54
2 5 0 61.49 63.76 7 11 0 13.10 13.38 1 3 1 40-97 39.17
2 6 0 15.53 15.95 7 13 0 1.61 3.14 1 4 1 61.88 b 2.2 U
2 7 0 43.84 41.50 7 14 0 A.37 4.21 1 5 1 19.98 22,45
2
8 0 58.?fl58.66
7 15 0 2.20 2.91 16
1 36.24 36.152 10 0 11.79 12,75 7 16 0 4M2 4,39 1 7 1 24 » Ob 23.27
2
11 0 10.95 10.3fl 7 17 0 0.6 7 5.k 1 a 1 9.24 10.4 02
12 0 -7・46 7.9야
6 0 0 2^.11 25,07 1 g 1 9.06 12,362 13 0 8.50 7.4b 6 1 0 7.07 9"
。
1 10 1 10. uo 9.572 14 0 7.38 8.82 8 3 0 10.11 10.43 1 11 1 16.77 17.19
2 15 0 5.62 3.87 6 5 0 21,62 22.97 1 13 1 5« W % 34
2
17 0 4.35 3.30 8 & 0 13.74 13.72 1 15 1 11.77 10.212 18 0 3.74 e 8 0 6.bl 6.56 1 17 1 8.22 <1.99
3 1 0 55.x2 55.37 8 10 0 21.20 21.92 1 ia 1 3.97 3 .紬
3 2 0 26.81 25,48 e 11 0 15.05 12.89 1 19 1 4.67 4,68
3 4 0 16.64 14.66 8 12 0 5.46 6.01 2 0 1 73.63 73.06
3
5 0 7.27 7.44 8 13 0 4.77 4.582
1 1 43.00 42.963 6 0 11.37 9.63 8 14 0 1.41 1.11
2 2
1 33.81 33.033 7 0 12・68 11.07 8 15 0 fe.60 6.12
2
3 1 33.78 33.933 8 0 14.56 13.85 9 1 0 8.37 2G
2
4 1 13.74 11.253
9 0 20.25 22.34 9 2 0 3.09 2.78 2 5 1 39.06 39.273
10 0 29.17 26.68 9 3 0 22.15 23.002
6 1 26.71 24.853 11 0 27.96 25.91
느
4 0 28.76 28.18 2 7 1 7.66 5.073 12 0 4,94 5.lb 9 5 0 18.07 17.60 2 8 1 21.09 23.27
3 14 0 13.21 13.37 9 6 0 15・25 15.23 2 9 1 11.91 12.15
3 17 0 7.15 5・96 9 7 0 8.20 8.19
2
10 1 12.60 13.344 0 0 16.63 16,64 9 8 0 5.88 6.27 2 11 1 4.87
유.
384 1 0 7.31 5.54 9 9 0 4.15 5.11
2
12 1 40.084
2
0 17.59 10.63 9 11 0 4,17 2.502
13 1 lb.34 18.824 3 0 28.61 26,89 9 12 0 3.92 3.94
2 14
1 3.29 3.724 4 0 5.93 5.66 9 15 0 1.35 1.36
2
15 1 5.16 5.144 5 0 10.90 12.37 10 0 0 11.66 10.95
2
16 1 4.90 6.6?4 6 0 3.29 4.72 10 X 0 2.09 3.98
2
18 1 5.41 4.634 7 0 19.55 17.96 10 2 0 24.48 24.61 3 1 1 18.14 19.09
4 8 0 12.74 13.60 10 3 0 29.62 2S. 8a 3
2
1 36.90 38.294 9 0 9.79 9.64 10 4 0 3.79 5.20 3 4 1 47.96 47,15
4 11 0 10.64 10.55 10 7 0 4.15 4.67 3 5 1 6.8 8 9.75
4 12 0 13.65 14.28 10 8 0 0.29 0.84 3 1 12M8 11.76
4 14 0 11.34 10.73 10 10- 0 10.47 9.37 3 1 20.40 20.65
4 16 0 4.77 5.84 10 13 0 5,82 5.21 3 1 9.30 8.75
4 18 0 a. 35 6.10 11 1 .0 8.60 8.80 3 1 14.04 13.87
5 1 0 23.75 22.31 11 2 0 13.02 13.69 3 10 1 29.18 2 7.90
5 3 0 3.68 fe.28 11 3 0 14.06 11.06 3 11 1 13.03 15-25
5 4 0 50.13 5O.fel 11 4 0 13.27 13.71 3 12 1 19.01 L9.61
5 6 0 13.24 13.22 Tl 6 0 5.54 b.42 3 13 1 6.4
。
5.53Journal of the Korean Chemical Society
SaIicyIaldehyde-4-morpholinothiosemicarbazone^
결
정및 분자구조
7 H3 3 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 6 6 8 8 8 9
4 6 0 1 2 3 4 5 6 7 8 9 0 1 3 5 8 1 2 3 4 5 6 7 9 1 1
1 1 - 1 1 1
0 1 2 3 5 7 0 1 2 3 4 5 6 7 8 1 2 3 5 1 2 3 4 5 6 7 8 9 M
^
^
^ O 1 2 3 4 5 8 - 9 0
^ 2 3 4 6 1 1 1 1 1 1 1
1 1 1 1
n 1
1 1 1 1 i 1
Vol. 21,
L Fo 1 5.13 1 4.07 1 62.86 1 3.81 1 5.25 1 15.*7 1 40.02 1 48.90 1 24.06 1 12.38 1 9.86 1 7.18 1 20.65 1 5.68 1 6.75 1 7.27 1 4.79 1 60.26 i 35.84 1 5・23 1 15.68 1 15.61 1 4.63 1 18.21 1 12.66 1 8
.아
丄 1 12.33 1 7.00 1 2.91 1 6.36 1 9.06 1 25.54 1 16.73 1 31.94 1 4. !)6 1 14.33 1 11.93 1 16.85 1 10.55 1 6.40 1 9.88 1 6.21 丄 6.60 1 6.82 1 21.03 1 11.7^1 8.79 1 20.57 1 5.61 1 23.19 1 29.01 1 33.02 1 22,16 1 7.00 1 7.54 1 4.00 1 22.2«
1 5.90 1 13.52 1 25.16 1 9.53 1 9.74 1 6.14 1 15.99 1 5.27 1 9.71 1 5.29 1 2.07 1 6.88 1 0.96 1 8.10 No. 1, 1977
i
) ) r
><
j
?
?
>
* + 7 5 2 3 6 2 9 3 2 6 2 4 6 9 5 9 1 o 6 q
2 6 1 0
* 1 02 6, 09 90 74 15 28 12 86 50 83 41
<,9 36 21 44 06 97 70 08 96 36 19 87 33 61 81 02 10 26 97 31 90 12 - 19 - 51
皿
• a5 - 83 - 02 '36 '50 - 12 - fe, - 40 - 2<, - 6i, - 4 ' 9 - 3 - 1 - 7 - 4 - 3 - 0 - 0 - 9 - 9 - 0 - 9 - 8 - 8 - 7 - 4 - 5 - 2 - 4 - 8 - 8 - 5
F」
b 6 4 8 5 3 2 4 7 0 1 5 4 5 7 7 5 5 4 3 9 6 9 7 b 4 8 6 5 . / 4 4 9 7 6 4 2 , 0 1 . 8 6
1 3 4 2 1 2
5 3 1 1
n i l
2 1 3
i l l
V -
2 1 2 2 2
H 9 9 9
9 9 9 9. 9 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 3 4 4 4 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
K 2 4 6 7 8 0 1 2 3 4 5 0 1 2 3 4 5 6 7 8 0 1 3 2 3 7 9 1 0 3 4 5 6 1 1 4 6 7 8 9 0 5 6 0 2 4 6 0 0 2 6 8 1 2 3 4 5 6 7 8 9 0 1 2 4 6 7 0 1 2 3 1 1 1 1 1 1
i l l
1
1
1 1 1 1
1 1 1 1 1 1
K 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 1 2 3 4 5 6 7 B 9 0 1 2 3 4 5 6 7 0 1 2 3 4 5 7 8 9 0 1 2 3 4 5 6 8 1 2 3 4 5 6 7 8 9 0 2 4 - s 6 7 0 1 2 3
* - 5 6 2 1
上
고
1 1 1 1 11 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 H 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 e 4 4 4 4 4 ' 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 Fo
8.14
Fc 7.63 19.50 18.75 9.28 9.12 5.60 4.61 5.6Q 5.03 6.01 6.18 7.58 5,72 7.13 6・
인>
3.92 4・77 8.33 9.03 3.05 2.91 6・66 6.30 5.60 4.33 6.94 8.15 19.22 19.94 15.98 15.02 7.00 6.06 6.97 7,58 16.57 14,22 6.05 4.56 S.02 7,60 1.34 1.62 6.03 5,38 B.12 9.45 4.18 4.39 9.76 7.66 3.72 4,46 2.36 2.16 5.67 6,52
A.30 «9
3.90 3.01 9.86 10.88 4.63 4.60 5.86 6.21 5.01 5.20 5.05 5.38 2.16 3.17 4.02 3
•야
3 2.94 3.70 2.08 1.72 6.03 3.49 4.70 3.45 4.61 3.43 295.50 288.67 103.99 99,30 25.72 26.58 18・ 14 14.70 19.73 19.40 25.74 22.65 11.25 12.55 7.74 7.99 4.31 4.46 48.27 4b. 69 32・64 51,12 44.17 44.18 3.70 4.71 27.78 27.15 19.30 18.68 21.02 20.62 12.51 11.76 9.62 B.79 10.77 9.69 6.10 6.55 15.08 13.99 6.73 7.2q
4.84 5.37 6.40 5.70 36.12 36.29 2S.30 26.43 30-18 31.17 24 ・ 51 25,27L Fo Fc
2 15.58 15.88 2 51.44 52.3fe 2 2 0.94 [알. 74 2 30.75 29.18 2 36・45 36.07 2 6.68 8.27
2
]8.37 18.85 2 10.43 18.16 2 5.32 6.74 2 2.26 2.95 2 5.36 *.89 2 5.16 3.80 2 2.67 2.4, 2 6.03 4.23 2 4.60 3.55 2 44.21 43.43 2 10-00 17.09 2 20.85 19.72 2 13.65 12.73 2 10.99 11.01 2 10.68 11.22 2 17.07 17,40 2 5.34 6.06 2 16.25 15.24 2 21.68 20.62 2 21.64 20・45 2 2.34 2,99 2 5.10 8.502
8.88 9.51 2 4.78 3.55 2 2.33 3.29 2 6.49 5.27 2 20.73 20,68 2 26.08 24・43 2 13.43 14.73 2 32.65 31.56 2 3.48 3.06 2 15.95 16.02 2 16.55 16.25 2 5.58 6.53 2 14.62 14,09 2 11.46 12.36 2 7.71 6.782
11.5A 11.62 2 7.54 7,98 2 7.47 7.67 2 5.70 4.96 2 5.03 5.99 2 5.80 5.73 2 10.60 11.41 2 16.93 16.78 2 1고. 82 10.06 2 31.60 31.82 2 15.94 13.17 2 20.77 19.46 2 12.89 11.77 2 9.68 9.10 2 5.62 5.65 2 6.C8 5.59 2 8. t>6 8,46 2 7.47 7.38 2 2.22 2.92 2 5.13 5.51 2 3.30 3.77 2 34.68 34.15 2 16.35 16.52 2 20.57 21.072
10.09 9.34 2 15.83 13.45 2 4.BO 5.542 23.19