• 검색 결과가 없습니다.

1. Cancer Genome Atlas Network: Comprehensive molecular characterization of human colon and rectal cancer. Nature 487:

330-337, 2012

2. American Cancer Society: Cancer Facts And Figures 2012. 2012

3. Barbieri CE, Baca SC, Lawrence MS, Demichelis F, Blattner M, Theurillat JP, White TA, Stojanov P, Van Allen E, Stransky N, Nickerson E, Chae SS, Boysen G, Auclair D, Onofrio RC, Park K, Kitabayashi N, MacDonald TY, Sheikh K, Vuong T, Guiducci C, Cibulskis K, Sivachenko A, Carter SL, Saksena G, Voet D, Hussain WM, Ramos AH, Winckler W, Redman MC, Ardlie K, Tewari AK, Mosquera JM, Rupp N, Wild PJ, Moch H, Morrissey C, Nelson PS, Kantoff PW, Gabriel SB, Golub TR, Meyerson M, Lander ES, Getz G, Rubin MA, Garraway LA: Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. Nat Genet 44: 685-689, 2012

4. Bressac B, Kew M, Wands J, Ozturk M: Selective G to T mutations of p53 gene in hepatocellular carcinoma from southern Africa. Nature 350: 429-431, 1991

5. Brion M, Sanchez-Salorio M, Corton M, de la Fuente M, Pazos B, Othman M, Swaroop A, Abecasis G, Sobrino B, Carracedo A: Genetic association study of age-related macular degeneration in the Spanish

population. Acta Ophthalmol 89: e12-22, 2011

6. Chaubert P, Gayer R, Zimmermann A, Fontolliet C, Stamm B, Bosman F, Shaw P: Germ-line mutations of the p16INK4(MTS1) gene occur in a subset of patients with hepatocellular carcinoma. Hepatology 25:

1376-1381, 1997

7. Chiba T, Kamiya A, Yokosuka O, Iwama A: Cancer stem cells in hepatocellular carcinoma: Recent progress and perspective. Cancer Lett 286: 145-153, 2009

8. de La Coste A, Romagnolo B, Billuart P, Renard CA, Buendia MA, Soubrane O, Fabre M, Chelly J, Beldjord C, Kahn A, Perret C:

Somatic mutations of the beta-catenin gene are frequent in mouse and human hepatocellular carcinomas. Proc Natl Acad Sci U S A 95:

8847-8851, 1998

9. De Souza AT, Hankins GR, Washington MK, Orton TC, Jirtle RL:

M6P/IGF2R gene is mutated in human hepatocellular carcinomas with loss of heterozygosity. Nat Genet 11: 447-449, 1995

10. Debuire B, Lemoine A: Liver: Hepatocellular carcinoma. Atlas Genet Cytogenet Oncol Haematol, 2001

11. DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ: A framework for variation discovery and

genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498, 2011

12. Forbes SA, Bindal N, Bamford S, Cole C, Kok CY, Beare D, Jia M, Shepherd R, Leung K, Menzies A, Teague JW, Campbell PJ, Stratton MR, Futreal PA: COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res 39:

D945-950, 2011

13. Fujimoto A, Totoki Y, Abe T, Boroevich KA, Hosoda F, Nguyen HH, Aoki M, Hosono N, Kubo M, Miya F, Arai Y, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, Shigekawa Y, Kawakami Y, Arihiro K, Ohdan H, Gotoh K, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, Kamatani N, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, Nakagawa H: Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Nat Genet 44: 760-764, 2012

14. Furukawa T, Kuboki Y, Tanji E, Yoshida S, Hatori T, Yamamoto M, Shibata N, Shimizu K, Kamatani N, Shiratori K: Whole-exome sequencing uncovers frequent GNAS mutations in intraductal papillary mucinous neoplasms of the pancreas. Sci Rep 1: 161, 2011

15. Guichard C, Amaddeo G, Imbeaud S, Ladeiro Y, Pelletier L, Maad IB,

Calderaro J, Bioulac-Sage P, Letexier M, Degos F, Clement B, Balabaud C, Chevet E, Laurent A, Couchy G, Letouze E, Calvo F, Zucman-Rossi J: Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma. Nat Genet 44: 694-698, 2012

16. Hirohashi S, Kanai Y: Cell adhesion system and human cancer morphogenesis. Cancer Sci 94: 575-581, 2003

17. Ho DW, Yang ZF, Yi K, Lam CT, Ng MN, Yu WC, Lau J, Wan T, Wang X, Yan Z, Liu H, Zhang Y, Fan ST: Gene expression profiling of liver cancer stem cells by RNA-sequencing. PLoS One 7: e37159, 2012

18. Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, Li F, Wu K, Liang J, Shao D, Wu H, Ye X, Ye C, Wu R, Jian M, Chen Y, Xie W, Zhang R, Chen L, Liu X, Yao X, Zheng H, Yu C, Li Q, Gong Z, Mao M, Yang X, Yang L, Li J, Wang W, Lu Z, Gu N, Laurie G, Bolund L, Kristiansen K, Wang J, Yang H, Li Y, Zhang X: Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148: 873-885, 2012

19. Huang da W, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Nat Protoc 4: 44-57, 2009

20. Huang J, Deng Q, Wang Q, Li KY, Dai JH, Li N, Zhu ZD, Zhou B,

Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma. Nat Genet 44: 1117-1121, 2012

21. Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D: Global cancer statistics. CA Cancer J Clin 61: 69-90, 2011

22. Jenuwein T, Allis CD: Translating the histone code. Science 293:

1074-1080, 2001

23. Jiang Z, Jhunjhunwala S, Liu J, Haverty PM, Kennemer MI, Guan Y, Lee W, Carnevali P, Stinson J, Johnson S, Diao J, Yeung S, Jubb A, Ye W, Wu TD, Kapadia SB, de Sauvage FJ, Gentleman RC, Stern HM, Seshagiri S, Pant KP, Modrusan Z, Ballinger DG, Zhang Z: The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients. Genome Res 22: 593-601, 2012

24. Jiao X, Wood LD, Lindman M, Jones S, Buckhaults P, Polyak K, Sukumar S, Carter H, Kim D, Karchin R, Sjoblom T: Somatic mutations in the Notch, NF-KB, PIK3CA, and Hedgehog pathways in human breast cancers. Genes Chromosomes Cancer 51: 480-489, 2012

25. Kawate S, Takenoshita S, Ohwada S, Mogi A, Fukusato T, Makita F, Kuwano H, Morishita Y: Mutation analysis of transforming growth factor beta type II receptor, Smad2, and Smad4 in hepatocellular carcinoma. Int J Oncol 14: 127-131, 1999

26. Kita R, Nishida N, Fukuda Y, Azechi H, Matsuoka Y, Komeda T, Sando T, Nakao K, Ishizaki K: Infrequent alterations of the p16INK4A

gene in liver cancer. Int J Cancer 67: 176-180, 1996

27. Li H: Improving SNP discovery by base alignment quality.

Bioinformatics 27: 1157-1158, 2011

28. Li H, Durbin R: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760, 2009

29. Li M, Zhao H, Zhang X, Wood LD, Anders RA, Choti MA, Pawlik TM, Daniel HD, Kannangai R, Offerhaus GJ, Velculescu VE, Wang L, Zhou S, Vogelstein B, Hruban RH, Papadopoulos N, Cai J, Torbenson MS, Kinzler KW: Inactivating mutations of the chromatin remodeling gene ARID2 in hepatocellular carcinoma. Nat Genet 43: 828-829, 2011

30. Lu TZ, Feng ZP: NALCN: a regulator of pacemaker activity. Mol Neurobiol 45: 415-423, 2012

31. Matsuzaki K, Murata M, Yoshida K, Sekimoto G, Uemura Y, Sakaida N, Kaibori M, Kamiyama Y, Nishizawa M, Fujisawa J, Okazaki K, Seki T: Chronic inflammation associated with hepatitis C virus infection perturbs hepatic transforming growth factor beta signaling, promoting cirrhosis and hepatocellular carcinoma. Hepatology 46:

48-57, 2007

32. McGivern DR, Lemon SM: Virus-specific mechanisms of carcinogenesis in hepatitis C virus associated liver cancer. Oncogene 30: 1969-1983, 2011

Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA: The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:

1297-1303, 2010

34. Michielsen P, Ho E: Viral hepatitis B and hepatocellular carcinoma.

Acta Gastroenterol Belg 74: 4-8, 2011

35. Miyoshi Y, Iwao K, Nagasawa Y, Aihara T, Sasaki Y, Imaoka S, Murata M, Shimano T, Nakamura Y: Activation of the beta-catenin gene in primary hepatocellular carcinomas by somatic alterations involving exon 3. Cancer Res 58: 2524-2527, 1998

36. Muller-Tidow C, Klein HU, Hascher A, Isken F, Tickenbrock L, Thoennissen N, Agrawal-Singh S, Tschanter P, Disselhoff C, Wang Y, Becker A, Thiede C, Ehninger G, zur Stadt U, Koschmieder S, Seidl M, Muller FU, Schmitz W, Schlenke P, McClelland M, Berdel WE, Dugas M, Serve H: Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia. Blood 116: 3564-3571, 2010

37. Murakami Y, Hayashi K, Hirohashi S, Sekiya T: Aberrations of the tumor suppressor p53 and retinoblastoma genes in human hepatocellular carcinomas. Cancer Res 51: 5520-5525, 1991

38. Nakamura T, Iwamura Y, Kaneko M, Nakagawa K, Kawai K, Mitamura K, Futagawa T, Hayashi H: Deletions and rearrangements

some neurogenic tumors as found in a study of 121 tumors. Jpn J Clin Oncol 21: 325-329, 1991

39. Ng SB, Buckingham KJ, Lee C, Bigham AW, Tabor HK, Dent KM, Huff CD, Shannon PT, Jabs EW, Nickerson DA, Shendure J, Bamshad MJ: Exome sequencing identifies the cause of a mendelian disorder.

Nat Genet 42: 30-35, 2010

40. Nishida N, Fukuda Y, Komeda T, Kita R, Sando T, Furukawa M, Amenomori M, Shibagaki I, Nakao K, Ikenaga M, et al.: Amplification and overexpression of the cyclin D1 gene in aggressive human hepatocellular carcinoma. Cancer Res 54: 3107-3110, 1994

41. Prasad KN, Hovland AR, Nahreini P, Cole WC, Hovland P, Kumar B, Prasad KC: Differentiation genes: are they primary targets for human carcinogenesis? Exp Biol Med (Maywood) 226: 805-813, 2001

42. Puda A, Milosevic JD, Berg T, Klampfl T, Harutyunyan AS, Gisslinger B, Rumi E, Pietra D, Malcovati L, Elena C, Doubek M, Steurer M, Tosic N, Pavlovic S, Guglielmelli P, Pieri L, Vannucchi AM, Gisslinger H, Cazzola M, Kralovics R: Frequent deletions of JARID2 in leukemic transformation of chronic myeloid malignancies.

Am J Hematol 87: 245-250, 2012

43. Puisieux A, Ozturk M: TP53 and hepatocellular carcinoma. Pathol Biol (Paris) 45: 864-870, 1997

44. Qin LX, Tang ZY: The prognostic molecular markers in hepatocellular

carcinoma. World J Gastroenterol 8: 385-392, 2002

45. Quesada V, Conde L, Villamor N, Ordonez GR, Jares P, Bassaganyas L, Ramsay AJ, Bea S, Pinyol M, Martinez-Trillos A, Lopez-Guerra M, Colomer D, Navarro A, Baumann T, Aymerich M, Rozman M, Delgado J, Gine E, Hernandez JM, Gonzalez-Diaz M, Puente DA, Velasco G, Freije JM, Tubio JM, Royo R, Gelpi JL, Orozco M, Pisano DG, Zamora J, Vazquez M, Valencia A, Himmelbauer H, Bayes M, Heath S, Gut M, Gut I, Estivill X, Lopez-Guillermo A, Puente XS, Campo E, Lopez-Otin C: Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nat Genet 44: 47-52, 2012

46. Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ: ENCODE whole-genome data in the UCSC genome browser (2011 update).

Nucleic Acids Res 39: D871-875, 2011

47. Ren D: Sodium leak channels in neuronal excitability and rhythmic behaviors. Neuron 72: 899-911, 2011

48. Roth A, Ding J, Morin R, Crisan A, Ha G, Giuliany R, Bashashati A, Hirst M, Turashvili G, Oloumi A, Marra MA, Aparicio S, Shah SP:

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.

Bioinformatics 28: 907-913, 2012

49. Saldanha AJ: Java Treeview--extensible visualization of microarray data. Bioinformatics 20: 3246-3248, 2004

50. Satoh S, Daigo Y, Furukawa Y, Kato T, Miwa N, Nishiwaki T, Kawasoe T, Ishiguro H, Fujita M, Tokino T, Sasaki Y, Imaoka S, Murata M, Shimano T, Yamaoka Y, Nakamura Y: AXIN1 mutations in hepatocellular carcinomas, and growth suppression in cancer cells by virus-mediated transfer of AXIN1. Nat Genet 24: 245-250, 2000

51. Stephens PJ, Tarpey PS, Davies H, Van Loo P, Greenman C, Wedge DC, Nik-Zainal S, Martin S, Varela I, Bignell GR, Yates LR, Papaemmanuil E, Beare D, Butler A, Cheverton A, Gamble J, Hinton J, Jia M, Jayakumar A, Jones D, Latimer C, Lau KW, McLaren S, McBride DJ, Menzies A, Mudie L, Raine K, Rad R, Chapman MS, Teague J, Easton D, Langerod A, Lee MT, Shen CY, Tee BT, Huimin BW, Broeks A, Vargas AC, Turashvili G, Martens J, Fatima A, Miron P, Chin SF, Thomas G, Boyault S, Mariani O, Lakhani SR, van de Vijver M, van 't Veer L, Foekens J, Desmedt C, Sotiriou C, Tutt A, Caldas C, Reis-Filho JS, Aparicio SA, Salomon AV, Borresen-Dale AL, Richardson AL, Campbell PJ, Futreal PA, Stratton MR: The landscape of cancer genes and mutational processes in breast cancer. Nature 486: 400-404, 2012

52. Stratton MR, Campbell PJ, Futreal PA: The cancer genome. Nature 458: 719-724, 2009

53. Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550, 2005

54. Sung WK, Zheng H, Li S, Chen R, Liu X, Li Y, Lee NP, Lee WH, Ariyaratne PN, Tennakoon C, Mulawadi FH, Wong KF, Liu AM, Poon RT, Fan ST, Chan KL, Gong Z, Hu Y, Lin Z, Wang G, Zhang Q, Barber TD, Chou WC, Aggarwal A, Hao K, Zhou W, Zhang C, Hardwick J, Buser C, Xu J, Kan Z, Dai H, Mao M, Reinhard C, Wang J, Luk JM: Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet 44: 765-769, 2012

55. Suzuki R, Shimodaira H: Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22: 1540-1542, 2006 KP, Chen DS, Chen PJ, Wu CI: Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proc Natl Acad Sci U S A 108: 12042-12047, 2011

57. Thorvaldsdottir H, Robinson JT, Mesirov JP: Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform, 2012

58. Totoki Y, Tatsuno K, Yamamoto S, Arai Y, Hosoda F, Ishikawa S, Tsutsumi S, Sonoda K, Totsuka H, Shirakihara T, Sakamoto H, Wang L, Ojima H, Shimada K, Kosuge T, Okusaka T, Kato K, Kusuda J, Yoshida T, Aburatani H, Shibata T: High-resolution characterization of a hepatocellular carcinoma genome. Nat Genet 43:

464-469, 2011

59. Wang K, Li M, Hakonarson H: ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38: e164, 2010

60. Wang L, Lawrence MS, Wan Y, Stojanov P, Sougnez C, Stevenson K, Werner L, Sivachenko A, DeLuca DS, Zhang L, Zhang W, Vartanov AR, Fernandes SM, Goldstein NR, Folco EG, Cibulskis K, Tesar B, Sievers QL, Shefler E, Gabriel S, Hacohen N, Reed R, Meyerson M, Golub TR, Lander ES, Neuberg D, Brown JR, Getz G, Wu CJ: SF3B1 and other novel cancer genes in chronic lymphocytic leukemia. N Engl J Med 365: 2497-2506, 2011

61. Wang L, Tsutsumi S, Kawaguchi T, Nagasaki K, Tatsuno K, Yamamoto S, Sang F, Sonoda K, Sugawara M, Saiura A, Hirono S, Yamaue H, Miki Y, Isomura M, Totoki Y, Nagae G, Isagawa T, Ueda H, Murayama-Hosokawa S, Shibata T, Sakamoto H, Kanai Y, Kaneda

A, Noda T, Aburatani H: Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency. Genome Res 22:

208-219, 2012

62. Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM: The complete genome of an individual by massively parallel DNA sequencing. Nature 452: 872-876, 2008

63. Wong KM, Hudson TJ, McPherson JD: Unraveling the genetics of cancer: genome sequencing and beyond. Annu Rev Genomics Hum Genet 12: 407-430, 2011

64. Wu J, Jiao Y, Dal Molin M, Maitra A, de Wilde RF, Wood LD, Eshleman JR, Goggins MG, Wolfgang CL, Canto MI, Schulick RD, Edil BH, Choti MA, Adsay V, Klimstra DS, Offerhaus GJ, Klein AP, Kopelovich L, Carter H, Karchin R, Allen PJ, Schmidt CM, Naito Y, Diaz LA, Jr., Kinzler KW, Papadopoulos N, Hruban RH, Vogelstein B:

Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitin-dependent pathways.

Proc Natl Acad Sci U S A 108: 21188-21193, 2011

65. Xu X, Hou Y, Yin X, Bao L, Tang A, Song L, Li F, Tsang S, Wu K, Wu H, He W, Zeng L, Xing M, Wu R, Jiang H, Liu X, Cao D,

Guo G, Hu X, Gui Y, Li Z, Xie W, Sun X, Shi M, Cai Z, Wang B, Zhong M, Li J, Lu Z, Gu N, Zhang X, Goodman L, Bolund L, Wang J, Yang H, Kristiansen K, Dean M, Li Y: Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 148: 886-895, 2012

66. Yakicier MC, Irmak MB, Romano A, Kew M, Ozturk M: Smad2 and Smad4 gene mutations in hepatocellular carcinoma. Oncogene 18:

4879-4883, 1999

67. Yamada T, De Souza AT, Finkelstein S, Jirtle RL: Loss of the gene encoding mannose 6-phosphate/insulin-like growth factor II receptor is an early event in liver carcinogenesis. Proc Natl Acad Sci U S A 94:

10351-10355, 1997

68. Ye SL, Takayama T, Geschwind J, Marrero JA, Bronowicki JP:

Current approaches to the treatment of early hepatocellular carcinoma.

Oncologist 15 Suppl 4: 34-41, 2010

69. Zhao H, Wang J, Han Y, Huang Z, Ying J, Bi X, Zhao J, Fang Y, Zhou H, Zhou J, Li Z, Zhang Y, Yang X, Yan T, Wang L, Torbenson MS, Cai J: ARID2: a new tumor suppressor gene in hepatocellular carcinoma. Oncotarget 2: 886-891, 2011

70. Zhou X, Ren L, Meng Q, Li Y, Yu Y, Yu J: The next-generation sequencing technology and application. Protein Cell 1: 520-536, 2010

ID Sample Gene Amino Acid Position Change References 1 AJHCC06 MORN1 NM_024848:c.G316A:p.G106S

chr1:2318900-2318900 C>T Guichard 2012 2 AJHCC02 ERRFI1 NM_018948:c.281delC:p.P94fs

chr1:8074378-8074378 GΔ Fujimoto 2012

3 AJHCC08 MAN1C1 NM_020379:c.G1147A:p.V383I chr1:26098153

-26098153 G>A  

4 AJHCC03 MYSM1 NM_001085487:c.A2250T:p.E750D chr1:59127098

-59127098 T>A  

5 AJHCC09 CLCA1 NM_001285:c.T1829C:p.V610A chr1:86960018

-86960018 T>C  

6 AJHCC02 PALMD NM_017734:c.C955A:p.H319N chr1:100154771

-100154771 C>A  

7 AJHCC03 VPS45 NM_007259:c.C774G:p.D258E chr1:150053510

-150053510 C>G  

8 AJHCC09 ARNT NM_001197325:c.T713C:p.M238T chr1:150807059

-150807059 A>G  

9 AJHCC10 RPTN NM_001122965:c.C1033A:p.Q345K chr1:152128542

-152128542 G>T  

10 AJHCC06 SPRR2B NM_001017418:c.C59T:p.T20M chr1:153043257

-153043257 G>A  

11 AJHCC03 DAP3 NM_001199850:c.A541G:p.S181G chr1:155698872

-155698872 A>G  

12 AJHCC07 MNDA NM_002432:c.A1159C:p.S387R chr1:158817689

-158817689 A>C Li 2011 13 AJHCC07 MNDA NM_002432:c.T1168G:p.F390V chr1:158817698

-158817698 T>G Li 2011 14 AJHCC07 TOMM40L NM_032174:c.A892T:p.R298X chr1:161198850

-161198850 A>T Guichard 2012 15 AJHCC09 NME7 NM_013330:c.A507G:p.I169M chr1:169267935

-169267935 T>C  

16 AJHCC09 STX6 NM_005819:c.C640T:p.R214W chr1:180953864

-180953864 G>A  

17 AJHCC09 CACNA1E NM_001205294:c.G5027A:p.G1676D chr1:181741312

-181741312 G>A  

18 AJHCC06 RNASEL NM_021133:c.T320C:p.L107P chr1:182555622

-182555622 A>G   

19 AJHCC03 HMCN1 NM_031935:c.T1868C:p.F623S chr1:185931689

-185931689 T>C Guichard 2012;

Fujimoto 2012 20 AJHCC09 HMCN1 NM_031935:c.G1957A:p.V653M chr1:185931778

-185931778 G>A Guichard 2012;

Fujimoto 2012 21 AJHCC10 ELF3 NM_001114309:c.G1064A:p.G355D chr1:201984399

-201984399 G>A  

22 AJHCC11 CD34 NM_001025109:c.G236A:p.G79D chr1:208073192

-208073192 C>T  

23 AJHCC09 RYR2 NM_001035:c.C10699T:p.R3567C chr1:237889582

-237889582 C>T Guichard 2012 24 AJHCC04 C1orf101 NM_001242340:c.C1166T:p.A389V chr1:244735743 C>T  

부 록

Appendix 1. 149 cancer-specific mutations by exome sequencing.

25 AJHCC04 THUMPD2 NM_025264:c.G586C:p.A196P chr2:39996936

-39996936 C>G  

26 AJHCC09 CCDC88A NM_001135597:c.G1606C:p.A536P chr2:55563867

-55563867 C>G  

27 AJHCC05 LRP1B NM_018557:c.G13071T:p.E4357D chr2:141032064

-141032064 C>A

Li 2011;

Guichard 2012;

Fujimoto 2012 28 AJHCC03 XIRP2 NM_001199144:c.A8371G:p.T2791A chr2:168106939

-168106939 A>G Fujimoto 2012 29 AJHCC11 BBS5 NM_152384:c.G66A:p.M22I chr2:170338767

-170338767 G>A  

30 AJHCC07 TMEM194B NM_001142645:c.A595G:p.K199E chr2:191382263

-191382263 T>C  

31 AJHCC03 SF3B1 NM_012433:c.A2221C:p.K741Q chr2:198266711

-198266711 T>G  

32 AJHCC09 AOX1 NM_001159:c.G3826T:p.G1276W chr2:201534325

-201534325 G>T  

33 AJHCC03 MDH1B NM_001039845:c.C787G:p.L263V chr2:207619856

-207619856 G>C  

34 AJHCC12 UNC80 NM_032504:c.A2078T:p.E693V chr2:210685150

-210685150 A>T  

35 AJHCC02 UNC80 NM_032504:c.G3441C:p.E1147D chr2:210707151

-210707151 G>C  

36 AJHCC03 USP40 NM_018218:c.C1516T:p.P506S chr2:234438147

-234438147 G>A  

37 AJHCC03 SPP2 NM_006944:c.G364A:p.V122I chr2:234969043

-234969043 G>A  

38 AJHCC03 ANKRD28 NM_001195099:c.G2252T:p.S751I chr3:15718550

-15718550 C>A  

39 AJHCC07 GOLGA4 NM_002078:c.A3526G:p.S1176G chr3:37366903

-37366903 A>G Guichard 2012 40 AJHCC02 EXOG NM_005107:c.G164T:p.G55V  chr3:38539120

-38539120  G>T  

41 AJHCC09 SCN5A NM_001099405:c.G5005A:p.G1669S chr3:38592804

-38592804 C>T  

42 AJHCC02 CTNNB1 NM_001098209:c.T1161G:p.N387K chr3:41274911

-41274911 T>G

Li 2011;

Guichard 2012;

Fujimoto 2012 43 AJHCC02 C3orf23 NM_173826:c.A1022G:p.Y341C chr3:44441983

-44441983 A>G  

44 AJHCC10 SETD2 NM_014159:c.G5340A:p.W1780X chr3:47127742

-47127742 C>T  

45 AJHCC09 CACNA2D3 NM_018398:c.T2666A:p.L889X chr3:55021756

-55021756 T>A  

46 AJHCC09 OR5AC2 NM_054106:c.C166A:p.H56N chr3:97806182

-97806182 C>A  

47 AJHCC09 SIDT1 NM_017699:c.T994A:p.Y332N chr3:113304110

-113304110 T>A Li 2011 48 AJHCC03 COL6A5 NM_153264:c.T4013A:p.V1338E chr3:130119896

-130119896 T>A  

49 AJHCC03 PCCB NM_000532:c.G470C:p.G157A chr3:135980834

-135980834 G>C  

50 AJHCC12 SI NM_001041:c.C3487T:p.H1163Y chr3:164735791

-164735791 G>A  

51 AJHCC09 GNB4 NM_021629:c.A154T:p.R52W chr3:179137236

-179137236 T>A  

-195516488 53 AJHCC03 TIGD2 NM_145715:c.A670T:p.N224Y chr4:90034795

-90034795 A>T  

54 AJHCC01 LRBA NM_001199282:c.C5456T:p.A1819V chr4:151727485

-151727485 G>A  

55 AJHCC10 IRF2 NM_002199:c.A119T:p.H40L chr4:185340691

-185340691 T>A  

56 AJHCC10 DROSHA NM_001100412:c.T3374C:p.L1125S chr5:31421419

-31421419 A>G  

57 AJHCC03 RNF180 NM_001113561:c.C971G:p.T324S chr5:63510124

-63510124 C>G  

58 AJHCC04 ANKRD32 NM_032290:c.C632T:p.S211F chr5:93985196

-93985196 C>T  

59 AJHCC09 SLC12A2 NM_001046:c.A1023G:p.I341M chr5:127450348

-127450348 A>G  

60 AJHCC08 C5orf48 NM_207408:c.237_238del:p.79_80del chr5:129571765

-129571766 CTΔ   

61 AJHCC07 MATR3 NM_001194956:c.G268T:p.A90S chr5:138652744

-138652744 G>T  

62 AJHCC03 PCDHB5 NM_015669:c.G955T:p.V319L chr5:140515971

-140515971 G>T  

63 AJHCC10 PCDHB11 NM_018931:c.C1157A:p.P386Q chr5:140580504

-140580504 C>A  

64 AJHCC09 G3BP1 NM_005754:c.A1186T:p.S396C chr5:151180422

-151180422 A>T  

65 AJHCC03 KIF4B NM_001099293:c.C2941T:p.Q981X chr5:154396360

-154396360 C>T  

66 AJHCC06 HIST1H2B

D NM_021063:c.A287G:p.Q96R chr6:26158684

-26158684 A>G  

67 AJHCC07 HIST1H2AL NM_003511:c.G295C:p.G99R chr6:27833427

-27833427 G>C  

68 AJHCC01 OR2J 3 NM_001005216:c.A406T:p.T136S chr6:29080073

-29080073 A>T  

69 AJHCC09 MOG NM_001170418:c.A224C:p.E75A chr6:29635681

-29635681 A>C   

70 AJHCC10 MUC21 NM_001010909:c.G667A:p.G223S chr6:30954619

-30954619 G>A  

71 AJHCC02 SLC26A8 NM_138718:c.T2594G:p.V865G chr6:35911681

-35911681 A>C  

72 AJHCC06 C6orf132 NM_001164446:c.C2065A:p.P689T chr6:42073585

-42073585 G>T  

73 AJHCC09 GSTA4 NM_001512:c.A391G:p.R131G chr6:52849285

-52849285 T>C  

74 AJHCC03 ME1 NM_002395:c.C508T:p.P170S chr6:84055984

-84055984 G>A  

75 AJHCC08 TBX18 NM_001080508:c.T691G:p.S231A chr6:85466496

-85466496 A>C  

76 AJHCC01 C6orf186 NM_001123364:c.T949A:p.W317R chr6:110567301

-110567301 A>T  

77 AJHCC11 FYN NM_153047:c.T1184A:p.V395E chr6:112015658

-112015658 A>T  

78 AJHCC10 CEP85L NM_001042475:c.G1246A:p.A416T chr6:118832472

-118832472 C>T  

79 AJHCC11 RPS12 NM_001016:c.C301T:p.R101C chr6:133138165

-133138165 C>T  

80 AJHCC06 C6orf211 NM_024573:c.G975A:p.M325I chr6:151789894

-151789894 G>A  

chr7:50513686

82 AJHCC10 GRB10 NM_001001549:c.984delA:p.K328fs chr7:50680510

-50680510 TΔ  

83 AJHCC04 SAMD9L NM_152703:c.G2461A:p.V821I chr7:92762824

-92762824 C>T  

84 AJHCC01 COL1A2 NM_000089:c.G1615T:p.V539F chr7:94043209

-94043209 G>T  

85 AJHCC09 MUC17 NM_001040105:c.T5896A:p.S1966T chr7:100680593

-100680593 T>A  

86 AJHCC05 DLD NM_000108:c.G406C:p.G136R chr7:107545471

-107545471 G>C  

87 AJHCC06 SLC13A1 NM_022444:c.T1643A:p.I548N chr7:122757532

-122757532 A>T  

88 AJHCC12 TRAM1 NM_014294:c.T356G:p.F119C chr8:71510200

-71510200 A>C  

89 AJHCC04 POP1 NM_001145860:c.1371delG:p.E457fs chr8:99152314

-99152314 GΔ  

90 AJHCC01 NSMCE2 NM_173685:c.G448A:p.G150R chr8:126369490

-126369490 G>A  

91 AJHCC02 FAM49B NM_016623:c.G851C:p.C284S chr8:130859110

-130859110 C>G  

92 AJHCC10 LRRC6 NM_012472:c.G1072A:p.V358M chr8:133622480

-133622480 C>T  

93 AJHCC05 IFT74 NM_001099222:c.G865A:p.D289N chr9:27016980

-27016980 G>A  

94 AJHCC06 IARS NM_002161:c.1705delT:p.Y569fs chr9:95025333

-95025333 AΔ  

95 AJHCC10 BAAT NM_001127610:c.331_332insA:p.E111

fs chr9:104133356

-104133356 Tins  

96 AJHCC09 ZNF883 NM_001101338:c.T19C:p.Y7H chr9:115760521

-115760521 A>G Fujimoto 2012 97 AJHCC10 CUBN NM_001081:c.G4133A:p.R1378H chr10:17061867

-17061867 C>T Guichard 2012;

Fujimoto 2012 98 AJHCC11 ZNF239 NM_001099283:c.A1325T:p.Q442L chr10:44052203

-44052203 T>A  

99 AJHCC02 WDFY4 NM_020945:c.G6101A:p.G2034D chr10:50034834

-50034834 G>A  

100 AJHCC01 PRKG1 NM_001098512:c.T1722G:p.I574M chr10:54048543

-54048543 T>G  

101 AJHCC02 ENTPD1 NM_001164183:c.G724T:p.E242X chr10:97620289

-97620289 G>T  

102 AJHCC01 OR52I1 NM_001005169:c.T668C:p.I223T chr11:4615936

-4615936 T>C  

103 AJHCC12 MS4A6E NM_139249:c.A276G:p.I92M chr11:60105342

-60105342 A>G  

104 AJHCC09 USP28 NM_020886:c.A2675G:p.Y892C chr11:11367458

3-113674583 T>C  

105 AJHCC10 LEPREL2 NM_014262:c.C1869A;p.D623E chr12:6947161

-6947161 C>A  

106 AJHCC11 CLEC12A NM_201623:c.A410C:p.K137T chr12:10133310

-10133310 A>C  

107 AJHCC04 TAS2R42 NM_181429:c.C617T:p.S206F chr12:11338927

-11338927 G>A  

108 AJHCC07 SLCO1C1 NM_001145944:c.C352T:p.P118S chr12:20870095

-20870095 C>T Li 2011 109 AJHCC01 CCNT1 NM_001240:c.A748C:p.N250H chr12:49089571

-49089571 T>G  

chr12:50500201

111 AJHCC11 SCN8A NM_001177984:c.G4467A:p.M1489I chr12:52188220

-52188220 G>A  

112 AJHCC11 SCN8A NM_001177984:c.C4614G:p.Y1538X chr12:52188367

-52188367 C>G  

113 AJHCC09 BAZ2A NM_013449:c.G1651T:p.E551X chr12:57005382

-57005382 C>A  

114 AJHCC09 XPOT NM_007235:c.G1273A:p.A425T chr12:64818469

-64818469 G>A Fujimoto 2012 115 AJHCC03 DYRK2 NM_003583:c.G334T:p.G112C chr12:68051240

-68051240 G>T  

116 AJHCC11 UTP20 NM_014503:c.A6884G:p.E2295G chr12:10176718

4-101767184 A>G  

117 AJHCC09 MYBPC1 NM_206821:c.C2714G:p.P905R chr12:10206738

0-102067380 C>G  

118 AJHCC03 TXNDC16 NM_001160047:c.C2180T:p.T727I chr14:52899305

-52899305 G>A   

119 AJHCC10 SYT16 NM_031914:c.C11T:p.A4V chr14:62462748

-62462748 C>T  

120 AJHCC04 PPP1R14D NM_017726:c.C358T:p.P120S chr15:41108174

-41108174 G>A  

121 AJHCC03 GANC NM_198141:c.A941G:p.Q314R chr15:42602928

-42602928 A>G  

122 AJHCC07 UBR1 NM_174916:c.C3962T:p.T1321I chr15:43281052

-43281052 G>A  

123 AJHCC06 TRPM7 NM_017672:c.T695A:p.L232Q chr15:50929756

-50929756 A>T  

124 AJHCC03 VPS13C NM_017684:c.A6796G:p.I2266V chr15:62214646

-62214646 T>C  

125 AJHCC03 CHSY1 NM_014918:c.G2131T:p.V711F chr15:10171787

1-101717871 C>A  

126 AJHCC09 CNOT1 NM_016284:c.G5929A:p.D1977N chr16:58566266

-58566266 C>T  

127 AJHCC05 DNAAF1 NM_178452:c.G930C:p.E310D chr16:84199455

-84199455 G>C  

128 AJHCC02 YWHAE NM_006761:c.G515T:p.G172V chr17:1264449

-1264449 C>A  

129 AJHCC10 SUPT6H NM_003170:c.G298A:p.D100N chr17:27001584

-27001584 G>A Fujimoto 2012 130 AJHCC02 CCL7 NM_006273:c.G61A:p.G21R chr17:32597370

-32597370 G>A  

131 AJHCC05 EME1 NM_001166131:c.T961C:p.F321L chr17:48456013

-48456013 T>C  

132 AJHCC07 ERN1 NM_001433:c.A266G:p.N89S chr17:62157038

-62157038 T>C Guichard 2012 133 AJHCC05 ABCA5 NM_018672:c.A3140G:p.H1047R chr17:67264088

-67264088 T>C Fujimoto 2012 134 AJHCC05 ASXL3 NM_030632:c.G1489T:p.D497Y chr18:31318857

-31318857 G>T  

135 AJHCC06 SMAD4 NM_005359:c.G1094C:p.G365A chr18:48591931

-48591931 G>C  

136 AJHCC01 DOK6 NM_152721:c.A628C:p.T210P chr18:67406229

-67406229 A>C  

137 AJHCC02 CYB5A NM_001190807:c.G300T:p.W100C chr18:71920894

-71920894 C>A  

138 AJHCC01 ITPKC NM_025194:c.G292T:p.A98S chr19:41223332

-41223332 G>T  

139 AJHCC07 ZNF175 NM_007147:c.G2086C:p.D696H chr19:52091670

-52091670 G>C  

-53856536 141 AJHCC09 NCOA6 NM_001242539:c.A2834T:p.Q945L chr20:33334691

-33334691 T>A  

142 AJHCC12 PIGT NM_001184730:c.G392T:p.S131I chr20:44048792

-44048792 G>T  

143 AJHCC03 UBE2C NM_181800:c.G373A:p.E125K chr20:44444531

-44444531 G>A  

144 AJHCC08 KRTAP26-1 NM_203405:c.G503T:p.C168F chr21:31691851

-31691851 C>A  

145 AJHCC02 CHEK2 NM_007194:c.G920A:p.G307E chr22:29095914

-29095914 C>T  

146 AJHCC11 FAM47A NM_203408:c.T2156A:p.L719H chrX:34148240

-34148240 A>T  

147 AJHCC10 ITIH6 NM_198510:c.C143A:p.S48Y chrX:54823489

-54823489 G>T  

148 AJHCC10 ITIH6 NM_198510:c.C134A:p.T45K chrX:54823498

-54823498 G>T  

149 AJHCC11 FGL1 NM_004467:c.546_547insA:p.N182fs chr8:17726470

-17726470 Tins   

ABSTRACT

-Analysis of Exome Sequencing in Hepatocellular

관련 문서